Skip to content

Pull requests: scverse/scanpy

New pull request New
90 Open 2,121 Closed
90 Open 2,121 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

fix: sc.pl.paga cax handling with multiple colors
#4319 opened Aug 22, 2026 by AdvaitS Loading…
2 of 3 tasks
1
1
feat: Add ncols parameter to pl.paga
#4317 opened Aug 22, 2026 by AdvaitS Loading…
2 of 3 tasks
1
1
feat: make use_rep accept anndata.acc
#4315 opened Aug 21, 2026 by flying-sheep Member Loading…
2 of 3 tasks
1.13.0
1
4
docs: update 'Plotting with Marsilea' in how-to
#4311 opened Aug 21, 2026 by Mr-Milk Loading…
3
chore: use scverse-misc for data downloading
#4310 opened Aug 21, 2026 by flying-sheep Member Loading…
2 of 3 tasks
1.13.0
1
2
feat: add bbknn
#4306 opened Aug 19, 2026 by Intron7 Member • 2/2 Loading… 1.13.0
1
2
fix: only warn from log1p when the target representation was already transformed
#4298 opened Aug 16, 2026 by Mohit-Ak • Draft
1
2
docs: document norm parameter for embedding scatter plots
#4297 opened Aug 14, 2026 by Zethson Member • Draft 1.12.4
1
1
feat: support acc shortcuts
#4288 opened Aug 11, 2026 by flying-sheep Member Loading…
1 of 3 tasks
1.13.0
6
Update template to v0.8.0
#4221 opened Jul 17, 2026 by scverse-bot Loading…
1
feat: pp.scale allow selecting correction
#4220 opened Jul 16, 2026 by AxelMcKenna Contributor Loading…
2 of 3 tasks
2
feat: add min_cells parameter to dotplot
#4218 opened Jul 15, 2026 by AlsoTheZv3n Loading…
1
feat: add Array API support via array-api-compat
#4179 opened Jun 25, 2026 by amalia-k510 Contributor • Draft
26
feat: add networkit flavor for parallel Leiden clustering
#4170 opened Jun 22, 2026 by amalia-k510 Contributor • Draft
16
feat(preprocessing): add optimal shifted CLR (PFlog1pPF) normalization
#4160 opened Jun 14, 2026 by rwbaber Contributor Loading…
1 of 3 tasks
25
fix(experimental.pp.hvg): scope per-batch clip threshold in pearson_residuals HVG Area – Preprocessing 🧼
#4138 opened May 23, 2026 by Arshammik Loading… 1.12.4
4
fix: anchor sc.pl.scatter colorbar to user-supplied ax
#4137 opened May 21, 2026 by gkneighb Loading… 1.12.4
1
3
feat: allow precomputed connectivities in neighbors
#4133 opened May 19, 2026 by ehsanestaji • Draft
2 of 3 tasks
1.12.4
1
3
fix: consistent modularity by using Weighted_Adjacency directly
#4113 opened May 8, 2026 by flying-sheep Member • Draft
2 of 3 tasks
2.0.0
1
4
add backends
#4108 opened May 7, 2026 by Intron7 Member Loading… 1.13.0
9
feat: add keep_sparse parameter for aggregate and optimize it
#4073 opened Apr 17, 2026 by mumichae Contributor Loading…
3 tasks done
1.13.0
1
6
feat: add layer argument to 10x read functions
#4072 opened Apr 17, 2026 by flying-sheep Member • Draft
1 of 3 tasks
1
1
perf: parallel downsample
#4004 opened Mar 18, 2026 by flying-sheep Member • Draft
11
fix: reorder pts/pts_rest to match significance ranking in rank_genes_groups
#3997 opened Mar 10, 2026 by LiudengZhang Contributor Loading…
3 tasks done
1
5
fix: regress_out for more threads than 64
#3954 opened Jan 26, 2026 by Intron7 Member Loading… 1.12.4
3
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.