Add paramsets and include/exclude filters to run_benchmark

[rcannood]

Describe your changes

Ports the recent run_benchmark improvements from task_template.

• Write the commit the workflow ran from and the launch time into task_info.yaml, instead of publishing _viash.yaml verbatim (Write the commit and timestamp into task_info.yaml task_template#18). The commit field was never filled in correctly before.
• Update the common submodule to get the paramset helpers (Add paramset helpers to helper.nf common_resources#41).
• Replace --method_ids with --methods_include/--methods_exclude, and add --metrics_include/--metrics_exclude (Replace method_ids with methods/metrics include and exclude task_template#20).
• Run parameterised methods once per paramset, taken from info.variants or a new --paramsets file. Scores are tagged with paramset_name/paramset, and --methods_include/--methods_exclude accept <method_id>.<paramset_name> (Add support for paramsets task_template#23).
• cellmapper_linear: use mask_var: "none" instead of null for the unmasked variants. Viash drops null values from the config, so these variants silently fell back to mask_var: "hvg" and duplicated their -hvg counterparts.

Heads-up: cellmapper_linear (6 variants) and cellmapper_scvi (5 variants) now run once per variant by default, so the full benchmark gets more expensive for those two.

Tested locally on bmmc_cite/normal with --methods_include 'mean_per_gene;cellmapper_linear.cellmapper-pca;cellmapper_linear.cellmapper-cca' --metrics_include correlation: all 13 processes succeeded and the scores are tagged with the right paramsets.

Checklist before requesting a review

• I have performed a self-review of my code

• Check the correct box. Does this PR contain:

  • Breaking changes
  • New functionality
  • Major changes
  • Minor changes
  • Bug fixes

• Proposed changes are described in the CHANGELOG.md

• CI Tests succeed and look good!