All pull requests

Pull requests

• bcftools/query: move ext.suffix to an input

  #13037·Totejolo opened Sep 25, 2026·

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• ENH: provided fix for issue 13034

  #13036·Melclic opened Sep 25, 2026·

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  1

• Add modkit/dmr module

  #13021·YannVRB opened Sep 23, 2026·

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  4

• Add new component: tantan

  Ready for Review
  #13017·snunzi opened Sep 23, 2026Contributor·

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  6

• Bump mgnifam/updatefamilies to 3.1.0, add stats output

  size/s
  #13014·vagkaratzas opened Sep 23, 2026Contributor·

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• Bump mgnifam/generatefamilies to 3.1.0, add stats output

  size/s
  #13013·vagkaratzas opened Sep 23, 2026Contributor·

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• Update cellranger to version 10.1.0

  #13012·heuermh opened Sep 22, 2026Contributor·

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• 🔧 update to VueGen 0.7.0

  size/s
  #13010·enryH opened Sep 22, 2026Contributor·

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• Add vepyr/annotate module

  Ready for Review
  #13001·mwiewior opened Sep 20, 2026·

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  13

• Swap narfmap/hashtable to topics

  size/xl
  #13000·SPPearce opened Sep 19, 2026Contributor·

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  1

  1

• Add custom/taxonomytree module and taxonomy2phylogeny subworkflow

  #12977·erikrikarddaniel opened Sep 16, 2026Member·

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  13

• freyja: update to 2.0.4

  #12964·pditommaso opened Sep 15, 2026Contributor·

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  5

• Smudgeplot all

  size/m
  #12960·DLBPointon opened Sep 15, 2026Contributor·

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• metaproviz/internalstandard module #12957

  #12958·ChristinaSchmidt1 opened Sep 15, 2026·

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  1

  15

• Update to topic universc

  #12955·LouisLeNezet opened Sep 14, 2026Contributor·

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  1

  3

  

• Added new module arcane/express

  Ready for Review
  #12952·LeonHornich opened Sep 14, 2026Contributor·

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• Add crabs/merge module

  #12930·xHaMMaDy opened Sep 13, 2026Contributor·

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  1

• fix(manta): pin working biocontainer to avoid segfault

  #12929·kanishkanandhkumar opened Sep 11, 2026·

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  1

  1

• New module: motifmatchr/matchmotifs

  #12927·PFRoux opened Sep 10, 2026Contributor·

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  1

• Add sativaepang/* modules: reference, lootasks, looplace, looscore

  #12910·erikrikarddaniel opened Sep 9, 2026Member·

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  31

• CI: test composite change detection action

  #12898·adamrtalbot opened Sep 7, 2026Contributor·

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• fix(clustalo/align): wait for compression and propagate pigz failures

  #12894·dnncha opened Sep 6, 2026Contributor·

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  11

• Add STAR Suite 1.9.5 alignment and genome generation modules

  #12826·lhhunghimself opened Aug 27, 2026·

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  1

• Add parabricks/deepsomatic

  size/m
  #12797·SPPearce opened Aug 26, 2026Contributor·

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  3

• Remove fixed UMI-tools seeds

  Do not merge yet
  #12662·pinin4fjords opened Aug 12, 2026Member·

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  5