Restructure material entity branch and fix axioms

[XimeAixa]

Material entity branch (IDPO:0000091-0000098)

Two modelling errors fixed:

• protein region (IDPO:0000095) was is_a protein, entailing that every IDR
  and every ordered region is itself a protein. Now BFO:0000024 (fiat object
  part) with part_of some protein.
• condensate (IDPO:0000092) was is_a compound, which is defined as a
  molecule. A condensate is an assembly of many molecules, so the genus did not
  hold. Now BFO:0000027 (object aggregate).

Also:

• compound and protein re-parented from BFO:0000040 to BFO:0000030 (object)
• biomolecular condensate: added output of some 'biomolecular condensate formation' (RO:0002353)
• definitions rewritten so the stated genus matches the asserted parent
• hasOBONamespace changed from compound / protein to material_entity,
  consistent with the other branches

Logical definitions

Added:

• IDPO:0000096 = protein and ('has quality' some 'disorder state')
• IDPO:0000097 = 'protein region' and ('has quality' some 'disorder state')
• IDPO:0000098 = 'protein region' and ('has quality' some 'order state')

Other fixes

Several typos were fixed in definitions, the ontology roots were updated. No terms added, removed, obsoleted or relabelled.

Axioms modified:

-IDPO:0000001 SubClassOf: 'quality of' some (protein or 'protein region')
-IDPO:0000030 SubClassOf: 'function of' some 'intrinsically disordered region'
-IDPO:0000085 SubClassOf: 'role of' some 'intrinsically disordered region'
-IDPO:0000100 SubClassOf: 'role of' some (protein or 'protein region')

Axioms removed:

-IDPO:0000030 SubClassOf: 'has quality' some 'disorder state'