All pull requests

Pull requests

• guard torch.cuda.synchronize for CPU/MPS eval paths

  #271·LiudengZhang opened May 15, 2026·

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• Aadduri/clean code

  #258·abhinadduri opened Feb 24, 2026Collaborator·

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  3

• adds a new sort utility to order h5ad files for faster cell load

  #251·abhinadduri opened Jan 26, 2026Collaborator·

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• Store and Access HVG Gene Names in AnnData

  #246·nick-youngblut opened Dec 19, 2025Contributor·

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  14

• feat: Added FDR threshold as a user defined option in prediction pipeline

  #245·Rive-001 opened Dec 16, 2025Collaborator·

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• Add PDGrapher forward and inverse perturbation models

  codex
  #239·fctb12 opened Oct 28, 2025Collaborator·

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• Add batch token loss to validation step

  #233·fctb12 opened Oct 16, 2025Collaborator·

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• Add toggle to disable perturbation encoder in state transition model

  codex
  #232·fctb12 opened Oct 15, 2025Collaborator·

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• build: Add optional W&B run grouping via config

  #222·Rive-001 opened Sep 24, 2025Collaborator·

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• [feature] heatmap functionality for transition model

  #214·dhruvji opened Sep 19, 2025Collaborator·

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• Fix: Update .gitignore to not exclude wandb OmegaConf config

  #211·cwognum opened Sep 19, 2025·

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• mps support for tx train

  #185·aceniccola opened Aug 23, 2025·

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• Vectordb upsert

  #155·nick-youngblut opened Jul 23, 2025Contributor·

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• Update README.md

  #151·dhruvji opened Jul 21, 2025Collaborator·

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• added the groupby logic to inference code

  #146·abhinadduri opened Jul 18, 2025Collaborator·

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• Update README.md

  #123·rohankshah04 opened Jul 1, 2025Collaborator·

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• gene decoder bool

  #122·dhruvji opened Jun 30, 2025Collaborator·

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• Clean se

  #94·abhinadduri opened Jun 23, 2025Collaborator·

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• Removing old stuff from sets

  #93·dhruvji opened Jun 22, 2025Collaborator·

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• learning rate added using configure optimizers

  #83·dhruvji opened Jun 11, 2025Collaborator·

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• Integrating state with CellSentence Data from cell-load

  #79·sravya8 opened Jun 6, 2025Collaborator·

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